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Public Resources

This page contains public resources from the Novoa Lab

  • PUBLICATION RESOURCES

    Publicly available processed data and code

  • Accurate detection of m6A RNA modifications in native RNA sequences

    Liu*, Begik* et al., Nature Communications 2019

    Github (EpiNano)      Curlcake data (FastQ)       Yeast mRNA DRS data (FastQ)      Raw Fast5

  • Integrative analyses of the RNA modification machinery reveal tissue- and cancer-specific signatures

    Begik et al., Genome Biol 2020

    Github      Data

  • Barcoding and demultiplexing Oxford Nanopore native RNA sequencing reads with deep residual learning

    Smith et al., Genome Res 2020

    Github      PRJNA545820

  • MasterOfPores: A Workflow for the Analysis of Oxford Nanopore Direct RNA Sequencing Datasets

    Cozzuto et al., Frontiers in Genetics 2020

    Github